PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi10g07290.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YB
Protein Properties Length: 129aa    MW: 14109.8 Da    PI: 4.5555
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi10g07290.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB150.33.9e-4725101278
            NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfed 78 
                      reqdrflPianvsrimkk+lP+nakisk+aketvqecvsefisf+t+easdkcq+ekrktingddllwa++tlGfe+
  Vradi10g07290.1  25 REQDRFLPIANVSRIMKKALPGNAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEE 101
                      89*************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.0E-4422101IPR009072Histone-fold
SuperFamilySSF471138.07E-3323100IPR009072Histone-fold
PfamPF008086.6E-293094IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.6E-125876No hitNo description
PROSITE patternPS0068506177IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006154.6E-127795No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MAESDNDSGG QAGNTSGGNE FSGCREQDRF LPIANVSRIM KKALPGNAKI SKEAKETVQE  60
CVSEFISFIT GEASDKCQKE KRKTINGDDL LWAMTTLGFE EDTCMDLGVR DQHLLQELDS  120
SRFMHVSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B4e-4025100277Transcription factor HapC (Eurofung)
4g92_B4e-4025100277Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-154AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014517914.11e-69PREDICTED: nuclear transcription factor Y subunit B-3-like
SwissprotO233102e-55NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLV7BNN55e-68V7BNN5_PHAVU; Uncharacterized protein
STRINGGLYMA15G12570.19e-65(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59134150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.11e-56nuclear factor Y, subunit B3